remove various ignores that had no actual issue

pyproject.toml

@@ -12,10 +12,6 @@ target-version = "py313"
 line-length = 88
 lint.select = [ "ALL" ]
 lint.ignore = [
-  "A003",
-  # A005 Module `inspect` shadows a Python standard-library module
-  # We might actually want to fix this.
-  "A005",
   "ANN401",
   "C901",
   "COM812",
@@ -48,6 +44,7 @@ lint.ignore = [
   "S607",
   "T201",
   "TD",
+  "INP001",
 
   # Maybe we can fix those
   "D205",
@@ -56,7 +53,6 @@ lint.ignore = [
   "PLR0913",
   "PLR0915",
   "FBT003",
-  "INP001",
 ]
 
 [tool.ruff.lint.per-file-ignores]
@@ -76,3 +72,49 @@ lint.ignore = [
 "*/fixtures/*.py" = [
   "S101"
 ]
+
+[tool.ruff]
+target-version = "py313"
+line-length = 88
+lint.select = [ "ALL" ]
+lint.ignore = [
+  "ANN401",  # any-type
+  "C901",    # complex-structure
+  "COM812",  # missing-trailing-comma
+  "D100",    # undocumented-public-module
+  "D101",    # undocumented-public-class
+  "D102",    # undocumented-public-method
+  "D103",    # undocumented-public-function
+  "D104",    # undocumented-public-package
+  "D105",    # undocumented-magic-method
+  "D107",    # undocumented-public-init
+  "D200",    # unnecessary-multiline-docstring
+  "D203",    # incorrect-blank-line-before-class
+  "D213",    # multi-line-summary-second-line
+  "D401",    # non-imperative-mood
+  "D415",    # missing-terminal-punctuation
+  "E402",    # module-import-not-at-top-of-file
+  "E501",    # line-too-long
+  "ERA001",  # commented-out-code
+  "FBT001",  # boolean-type-hint-positional-argument
+  "FBT002",  # boolean-default-value-positional-argument
+  "FIX",     # flake8-fixme (FIXME comments)
+  "G001",    # logging-string-format
+  "G004",    # logging-f-string
+  "PLR0911", # too-many-return-statements
+  "PLR2004", # magic-value-comparison
+  "PT023",   # pytest-incorrect-mark-parentheses-style
+  "S603",    # subprocess-without-shell-equals-true
+  "S607",    # start-process-with-partial-path
+  "T201",    # print
+  "TD",      # flake8-todos (TODO comments)
+  "INP001",  # implicit-namespace-package
+
+  # Maybe we can fix those
+  "D205",    # missing-blank-line-after-summary
+  "D400",    # missing-trailing-period
+  "PLR0912", # too-many-branches
+  "PLR0913", # too-many-arguments
+  "PLR0915", # too-many-statements
+  "FBT003",  # boolean-positional-value-in-call
+]