rename nix_shell_legacy to nix_shell and run_cmd to nix_shell

Than it's more obvious that we need to migrate.

pkgs/clan-cli/clan_cli/vms/run.py

@@ -19,7 +19,7 @@ from clan_cli.dirs import module_root, user_cache_dir, vm_state_dir
 from clan_cli.errors import ClanCmdError, ClanError
 from clan_cli.facts.generate import generate_facts
 from clan_cli.machines.machines import Machine
-from clan_cli.nix import nix_shell
+from clan_cli.nix import nix_shell_legacy
 from clan_cli.qemu.qga import QgaSession
 from clan_cli.qemu.qmp import QEMUMonitorProtocol
 
@@ -96,7 +96,7 @@ def prepare_disk(
     file_name: str = "disk.img",
 ) -> Path:
     disk_img = directory / file_name
-    cmd = nix_shell(
+    cmd = nix_shell_legacy(
         ["nixpkgs#qemu"],
         [
             "qemu-img",
@@ -127,7 +127,7 @@ def start_vm(
 ) -> Iterator[subprocess.Popen]:
     env = os.environ.copy()
     env.update(extra_env)
-    cmd = nix_shell(packages, args)
+    cmd = nix_shell_legacy(packages, args)
     machine.debug(f"Starting VM with command: {cmd}")
 
     with subprocess.Popen(

pkgs/clan-cli/clan_cli/vms/virtiofsd.py

@@ -6,7 +6,7 @@ from collections.abc import Iterator
 from pathlib import Path
 
 from clan_cli.errors import ClanError
-from clan_cli.nix import nix_shell
+from clan_cli.nix import nix_shell_legacy
 
 
 @contextlib.contextmanager
@@ -14,7 +14,7 @@ def start_virtiofsd(socket_path: Path) -> Iterator[None]:
     sandbox = "namespace"
     if shutil.which("newuidmap") is None:
         sandbox = "none"
-    virtiofsd = nix_shell(
+    virtiofsd = nix_shell_legacy(
         ["nixpkgs#virtiofsd"],
         [
             "virtiofsd",

pkgs/clan-cli/clan_cli/vms/waypipe.py

@@ -6,7 +6,7 @@ import time
 from collections.abc import Iterator
 
 from clan_cli.errors import ClanError
-from clan_cli.nix import nix_shell
+from clan_cli.nix import nix_shell_legacy
 
 VMADDR_CID_HYPERVISOR = 2
 
@@ -29,7 +29,7 @@ def start_waypipe(cid: int | None, title_prefix: str) -> Iterator[None]:
     if cid is None:
         yield
         return
-    waypipe = nix_shell(
+    waypipe = nix_shell_legacy(
         ["nixpkgs#waypipe"],
         [
             "waypipe",